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satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.CliqueCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.cond.DirectedCliqueCondition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph) - Method in class edu.claflin.finder.logic.Condition

Used to test if the supplied graph is within the bounds of the condition's implementation.

satisfies(Graph, Set<Node>, Set<Node>, Node) - Static method in class edu.claflin.finder.logic.BronKerboschBipartiteUtils

Private method for stepping through the adjacency lists and determining if the graph is bipartite.

satisfies(Graph, Set<Node>, Set<Node>, Node) - Method in class edu.claflin.finder.logic.cond.BipartiteCondition

Private method for stepping through the adjacency lists and determining if the graph is bipartite.

searchNode(Graph, Graph, Node, List<Node>) - Method in class edu.claflin.finder.algo.DepthFirstTraversalSearch

Helper method to search for the SubGraphs in Depth First search.

searchNode(Graph, Node) - Method in class edu.claflin.finder.algo.BreadthFirstTraversalSearch

Helper method to search for the SubGraphs in Breadth First Search.

second - Variable in class edu.claflin.finder.algo.jungutils.Pair

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.ConstantFunction

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.ForMapWithDefault

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.FunctionComposition

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.FunctionForMapNoDefault

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.PredicateFunction

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Functions.SupplierFunction

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.JdkPattern

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.AndPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.CompositionPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.ContainsPatternPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.InPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.InstanceOfPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.IsEqualToPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.NotPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.OrPredicate

serialVersionUID - Static variable in class edu.claflin.finder.algo.jungutils.Predicates.SubtypeOfPredicate

set(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Set the q value at the ith tree and heap's j column.

set(int, HeapNodeFG) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapQueue

set(T) - Method in class edu.claflin.finder.logic.communities.struct.BinarySearchTree

setA(double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.VectorValue

setc1(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

setc2(double) - Method in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

setData(D) - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's data (such as weight).

setFileLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil

Sets the FileLogs HashMap for selective logging to the file.

setForceOnAdd(boolean) - Method in class edu.claflin.finder.logic.ConditionedGraph

Accessor method for configuring if conditions are forced on add of network components.

setGraphSortOrder(Algorithm.GraphSortOrder) - Method in class edu.claflin.finder.algo.Algorithm

setGroup(String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setGroups(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

setHeap(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Set the value q and the ith heap's j column.

setI(int) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapNode

setIndex(int) - Method in class edu.claflin.finder.logic.communities.struct.TreeNodeInfo

setIndex1(int) - Method in class edu.claflin.finder.logic.communities.struct.walk_trap_struct.HeapNodeWT

setIndex2(int) - Method in class edu.claflin.finder.logic.communities.struct.walk_trap_struct.HeapNodeWT

setInfo(int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.HeapNodeFG

setInfo(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapNode

setInfo(T) - Method in class edu.claflin.finder.logic.communities.struct.TreeNode

Set the information of this TreeNode.

setJ(int) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.HeapNodeFG

setLeftChild(TreeNode) - Method in class edu.claflin.finder.logic.communities.struct.TreeNode

Set the left child TreeNode.

setNode(T, TreeNode<T>, TreeNode<T>) - Method in class edu.claflin.finder.logic.communities.struct.TreeNode

Set all the information of this TreeNode.

setOutput(File) - Static method in class edu.claflin.finder.Global

Sets the output directory for storing results.

setPartiteNumber(int) - Method in class edu.claflin.finder.algo.Algorithm

setPartiteNumber(int) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperNode

setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setPartitionNumbers(ArrayList<Map<String, CygrouperNode>>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

setProgress(double) - Method in class edu.claflin.finder.algo.Algorithm

setQ(double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.HeapNodeFG

setQ(double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.TreeNodeInfoFG

setRightChild(TreeNode) - Method in class edu.claflin.finder.logic.communities.struct.TreeNode

Set the right child TreeNode.

setSigma(double) - Method in class edu.claflin.finder.logic.communities.struct.walk_trap_struct.HeapNodeWT

setTerminalLogs(boolean[]) - Method in class edu.claflin.finder.log.LogUtil

Sets the TerminalLogs HashMap for selective terminal logging.

setTree(int, int, double) - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

Set value q and the ith tree's j column.

setUndirected(boolean) - Method in class edu.claflin.finder.logic.Edge

Access method for the Edge's undirectedness parameter.

setUniqueSubGraphs(ArrayList<Graph>) - Method in interface edu.claflin.finder.logic.cygrouper.CommunicationListener

setUniqueSubGraphs(ArrayList<Graph>) - Method in class edu.claflin.finder.logic.cygrouper.Communicator

ShortestPath - Class in edu.claflin.finder.algo

ShortestPath(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.ShortestPath

Public Constructor for creating Shortest Path Algorithm.

SIFGraphIO - Class in edu.claflin.finder.io.graph

A class for reading and writing graphs in the SIF format.

SIFGraphIO(String) - Constructor for class edu.claflin.finder.io.graph.SIFGraphIO

Constructs the SIFGraphIO object.

sigma - Variable in class edu.claflin.finder.logic.communities.struct.walk_trap_struct.HeapNodeWT

SimpleGraphIO - Class in edu.claflin.finder.io.graph

A class for reading and writing graphs.

SimpleGraphIO() - Constructor for class edu.claflin.finder.io.graph.SimpleGraphIO

Empty Constructor for instantiating the class.

size - Variable in class edu.claflin.finder.struct.DisjointSet

size() - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

size() - Method in class edu.claflin.finder.algo.jungutils.Pair

size() - Method in class edu.claflin.finder.logic.communities.Communities

size() - Method in class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.IndexedHeapQueue

size() - Method in class edu.claflin.finder.struct.DisjointSet

sortOrder - Variable in class edu.claflin.finder.algo.Algorithm

source - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperEdge

source - Variable in class edu.claflin.finder.logic.Edge

The node representing the source.

SparseGraph<V,E> - Class in edu.claflin.finder.algo.jungutils

An implementation of Graph that is suitable for sparse graphs and permits both directed and undirected edges.

SparseGraph() - Constructor for class edu.claflin.finder.algo.jungutils.SparseGraph

Creates an instance.

SparseMatrix - Class in edu.claflin.finder.logic.communities.struct.fast_greedy_struct

SparseMatrix is a sparse matrix with row format.

SparseMatrix(int) - Constructor for class edu.claflin.finder.logic.communities.struct.fast_greedy_struct.SparseMatrix

empty sparse matrix with allocated number of rows

start() - Method in class edu.claflin.finder.algo.jungutils.CommonMatcher

start() - Method in class edu.claflin.finder.algo.jungutils.JdkPattern.JdkMatcher

steps - Variable in class edu.claflin.finder.algo.clustering.Walktrap

subtypeOf(Class<?>) - Static method in class edu.claflin.finder.algo.jungutils.Predicates

SubtypeOfPredicate(Class<?>) - Constructor for class edu.claflin.finder.algo.jungutils.Predicates.SubtypeOfPredicate

superAddPartialGraph(List<Node>, List<Edge>) - Method in class edu.claflin.finder.logic.ConditionedGraph

Private method for circumventing the condition restrictions.

supplier - Variable in class edu.claflin.finder.algo.jungutils.Functions.SupplierFunction

SupplierFunction(Supplier<T>) - Constructor for class edu.claflin.finder.algo.jungutils.Functions.SupplierFunction

suppressLog - Variable in class edu.claflin.finder.logic.Graph

Used to suppress logging.

swap(int, int) - Method in class edu.claflin.finder.algo.jungutils.MapBinaryHeap

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